PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KFK26883.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis
Family WRKY
Protein Properties Length: 340aa    MW: 37994.8 Da    PI: 4.955
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KFK26883.1genomeMPIPBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31166224259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+
  KFK26883.1 166 SDMWAWRKYGQKPIKGSPYPRNYYRCSSTkGCLARKQVERSNLDPNIFIVTYTGEHTHP 224
                 79*************************998****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.2E-31152226IPR003657WRKY domain
SuperFamilySSF1182904.45E-27158226IPR003657WRKY domain
PROSITE profilePS5081133.051160226IPR003657WRKY domain
SMARTSM007745.2E-39165225IPR003657WRKY domain
PfamPF031063.3E-26167224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MSEDWDLFAV VRSCSSSVST ATNNGGNCKQ QDPPPPSPPP LFTHIHGDRD KERESSSSCN  60
ELQDSCKPFL PVTTTWSSPL VSSAHNVLMK QELIESQDQK PPLGVRVFPP SSTTISPSSS  120
SSVFVFRGQR DQLLQQQSHQ APLRSRKRKN QQKRTICHVT QENLSSDMWA WRKYGQKPIK  180
GSPYPRNYYR CSSTKGCLAR KQVERSNLDP NIFIVTYTGE HTHPRPTHRN SLAGSTRNKS  240
QPVNPIPKPE TVLVGSNIVK EEIHLSPTTP LKENDDVQGT NGDEEVNMED EEDEMEEEEE  300
GEEDDDDVDD LLIPNFTVRD RDDLFFPSSW SAGSAGDGGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-18154226274WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123980.0EU912398.1 Brassica napus WRKY27-1 transcription factor (WRKY27-1) mRNA, partial cds.
GenBankKC2465730.0KC246573.1 Brassica napus WRKY transcription factor 27.1 (WRKY27.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010442827.11e-147PREDICTED: probable WRKY transcription factor 27
SwissprotQ9FLX81e-130WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBLA0A087GAI10.0A0A087GAI1_ARAAL; Uncharacterized protein
STRINGBra022612.1-P1e-145(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99982636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-110WRKY DNA-binding protein 27